Package index • SpatialArtifacts

All functions

classifyEdgeArtifacts(): Classify Edge Artifacts into Hierarchical Categories
clumpEdges(): Detect edge dryspots using spatial clustering
detectEdgeArtifacts(): Unified Edge Artifact Detection
detectEdgeArtifacts_Visium(): Detect edge artifacts in spatial transcriptomics data
detectEdgeArtifacts_VisiumHD(): Detect Edge Artifacts in VisiumHD Data
focal_transformations(): Apply morphological transformations to identify connected outlier regions
focal_transformations_terra(): Morphological transformations using terra (optimized for VisiumHD)
problemAreas(): Identify all problem areas in spatial transcriptomics data
problemAreas_WithMorphology_terra(): Detect problem areas in VisiumHD data using morphological processing
spe_vignette: Mock SpatialExperiment for Vignettes